Towards an efficient computational mining approach to identify EST-SSR markers
نویسندگان
چکیده
منابع مشابه
Towards an efficient computational mining approach to identify EST-SSR markers
Microsatellites are the markers of choice due to their high abundance reproducibility, degree of polymorphism and co-dominant nature. These are mainly used for studying the genetic variability in different species and Marker assisted selection. Expressed Sequence Tags (ESTs) serve as the main resource for Simple Sequence Repeats (SSRs). The computational approach for detecting SSRs and developi...
متن کاملMining of EST-SSR markers in clam Meretrix meretrix larvae from 454 shotgun transcriptome.
A total of 2,970 EST-SSRs (2.38%) were identified by transcriptome sequencing of clam Meretrix meretrix (751,970 reads, ~310.82 Mbp), using 454 Genome Sequencer FLX next-generation sequencing platform. Dinucleotide SSR was the dominant repeat type (40.2%), followed by trinucleotide (37.8%), tetranuleotide (12.0%) and pentanucleotide (2.0%) SSR. The dominant repeat motif was AT (71.3%) in the di...
متن کاملEST-SSR: A New Class of Genetic Markers in Cotton
S. N. Qureshi, Department of Plant and Soil Science, P.O. Box 9555, Mississippi State University, Mississippi State, MS 39762; S. Saha and J. N. Jenkins, USDA-ARS, Crop Science Research Laboratory, P.O. Box 5367, Mississippi State, MS 39762; Ramesh V. Kantety, Department of Crop & Soil Sciences, 726 Bradfield Hall, Cornell University, Ithaca, NY 14853 * Corresponding author: [email protected]...
متن کاملGenetic Purity Assessment of Castor Hybrids Using Est-ssr Markers
Maintenance of genetic purity of a hybrid is essential to exploit its full potential. Genetic purity is generally assessed by conducting grow out test (GOT) where morphological and floral characters are analyzed, however results may be influenced by the environment. Further, it is expensive and time consuming. DNA based markers are rapid, reliable and cost effective for hybrid purity assessment...
متن کاملDevelopment of EST-SSR markers of Ipomoea nil
Although Japanese morning glory (Ipomoea nil (L.) Roth.) has been used intensively for genetic studies, DNA markers have not been developed in Ipomoea nil sufficient to cover all chromosomes. Therefore, we conducted microsatellite (simple sequence repeats, SSR) marker development in I. nil for future genetic studies. From 92,662 expressed sequence tag (EST) sequences, 514 unique microsatellite-...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformation
سال: 2012
ISSN: 0973-8894,0973-2063
DOI: 10.6026/97320630008201